ALLELIC POLYMORPHISM OF MICROSATELITE DNA LOCІ OF THREE BREEDS OF CANIS FAMILIARIS.
DOI:
https://doi.org/10.37000/abbsl.2021.98.04Keywords:
dogs, microsatellites, polymorphism, DNA, breed-specific allelesAbstract
Allelic polymorphism of three dog breeds by five DNA microsatellites was analyzed. Spectra and frequencies of allelic variability, special features of allelofunds, rare and breed-specific alleles were determined. In general, the species Canis familiis is a place of similarity of genetic processes in the studied breeds, which indicates that there are the same ranges and limits of the range of spectra of allelic polymorphism (LimNa = 5-13) and almost the same number of detected allelic variants (Na = 8,2- 9.2).
References
Khare V., Khare A. Modern approach in animal breeding by use of advanced molecular genetic techniques. International Journal of Livestock Research. 2017. Vol. 7(5). Р. 1-22.
Savolainen, P., Zhang, Y. P., Luo, J., Lundeberg, J., Leitner T. Genetic Evidence for an East Asian Origin of Domestic Dogs. Science. 2002. 22. Р. 1610–1613.
Рябинина О.М. Филогенетические связи и генетическое разнообразие некоторых отечественных пород собак (по данным анализа мтДНК): диссертация ... кандидата биологических наук : 03.00.15. Москва, 2008.- 117 с.
Гончаренко Г.Г., Зятьков С.А., Крук А.В. STR-маркеры в ДНК дактилоскопии домашних собак Canis familiaris L. Известия Гомельского государственного университета имени Ф. Скорины. 2017. № 3 (102). C. 25-30.
Berger B., Berger C., Heinrich J., Niederstätter H., Hecht W., Hellmann A., Rohleder U., Schleenbecker U., Morf N., Freire-Aradas A., McNevin D., Phillips C., Parson W. Dog breed affiliation with a forensically validated canine STR set. Forensic Sci Int Genet. 2018. 37 Р. 126-134. doi: 10.1016/j.fsigen.2018.08.005.
Ceh E., Dovc P. Population structure and genetic differentiation of livestock guard dog breeds from the Western Balkans. J Anim Breed Genet. 2014. 131(4). Р. 313-25. doi: 10.1111/jbg.12077.
Ostrander E.A., Wayne R.K. The canine genome. Genome Res. 2005. 15. Р. 1706–1716.
Ostrander E.A., Dreger D.L., Evans J.M. Canine Cancer Genomics: Lessons for Canine and Human Health. Annu Rev Anim Biosci. 2019. 15 (7). Р. 449-472. doi: 10.1146/annurev-animal-030117-014523.
Shinkarenko L., Guliakova O.G., Malienko V.A., Melnychuk S.D., Spyrydonov V. Analysis of Genetic Variability in American Pit Bull Terrier Breed. of Dogs with a High Inbreeding Level using Microsatellite Markers. Cytology and Genetics. 2010. 44 (4). Р. 206–211. doi: 10.3103/S0095452710040031.
Wang M.L., Jin X.Y., Xiong X., Yang J.L., Li J.P., Wang Q., Zhu B.F., Deng Y.J. Polymorphism analyses of 19 STRs in Labrador Retriever population from China and its heterozygosity comparisons with other retriever breeds. Mol Biol Rep. 2019. 46(2). Р. 1577-1584. doi: 10.1007/s11033-019-04601-4.
van Asch B., Alves C., Gusmão L., Pereira V., Pereira F., Amorim A. A new autosomal STR nineplex for canine identification and parentage testing. Electrophoresis. 2009. 30(2). Р. 417-23. doi: 10.1002/elps.200800307.
, Дзіцюк В.В., Ященко В.М., Круглик С.Г., Мельник О.В., Шельов А.В., Спиридонов В.Г., МельничукС.Д. Генетична ідентифікація собак. Київ.: Видавничий центр НУБіП України. 2012. 33 с.
https://www.thermofisher.com/order/catalog/product/4349041#/4349041
Hellmann A.P., Rohleder U., Eichmann C., Pfeiffer I., Parson W., Schleenbecker U. A proposal for standardization in forensic canine DNA typing: allele nomenclature of six canine-specific STR loci. J Forensic Sci. 2006. 51(2). Р. 274-81. doi: 10.1111/j.1556-4029.2006.00049.x.
Kanthaswamy S., Tom B.K., Mattila A.M., Johnston E., Dayton M., Kinaga J., Erickson B.J., Halverson J., Fantin D., De Nise S., Kou A., Malladi V., Satkoski J., Budowle B., Smith D.G., Koskinen M.T. Canine population data generated from a multiplex STR kit for use in forensic casework. J Forensic Sci. 2009. 54(4). Р. 29-40. doi: 10.1111/j.1556-4029.2009.01080.x.
Tom B.K., Koskinen M.T., Dayton M., Mattila A.M., Johnston E., Fantin D., Denise S., Spear T., Smith D.G., Satkoski J., Budowle B., Kanthaswamy S. Development of a nomenclature system for a canine STR multiplex reagent kit. J Forensic Sci. 2010. 55(3). Р. 597-604. doi: 10.1111/j.1556-4029.2010.01361.x.
Peakall R., Smouse P.E. GenAIEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research – an update. Bioinformatics. 2012. 28. P. 2537-2539.
Kalinowski S.T. HP-Rare: a computer program for performing rarefaction on measures of allelic diversity. Molecular Ecology Notes. 2005. 5. P. 187-189.
Hammer O., Harper D.A.T., Ryan P.D. PAST: Paleontological statistics software package for education and data analysis. Palaeontologia Electronica. 2001. 4. P. 1-9.
